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1

PIXUL-ChIP: integrated high-throughput sample preparation and analytical platform for epigenetic studies

Bomsztyk, Karol, Mar, Daniel, Wang, Yuliang, Denisenko, Oleg, Ware, Carol, Frazar, Christian D, Blattler, Adam, Maxwell, Adam D, MacConaghy, Brian E, Matula, Thomas J

Journal:

Nucleic Acids Research

Year:

2019

Language:

english

File:

PDF, 9.39 MB

english, 2019

2

Epigenetic Alterations in Acute Kidney Injury

Bomsztyk, Karol, Denisenko, Oleg

Journal:

Seminars in Nephrology

Year:

2013

Language:

english

File:

PDF, 522 KB

english, 2013

3

hnRNP K: One protein multiple processes

Karol Bomsztyk, Oleg Denisenko, Jerzy Ostrowski

Journal:

Year:

2004

Language:

english

File:

PDF, 248 KB

english, 2004

4

Microplate-based platform for combined chromatin and DNA methylation immunoprecipitation assays

Jingjing Yu, Qinghua Feng, Yusong Ruan, Radko Komers, Nancy Kiviat, Karol Bomsztyk

Journal:

BMC Molecular Biology

Year:

2011

Language:

english

File:

PDF, 1.31 MB

english, 2011

5

Role of Chromatin Structure in Integration of Helper-Dependent Adenoviral Vectors Containing the β -Globin Locus Control Region

Sova, Pavel, Wang, Hongjie, Bomsztyk, Karol, Stamatoyannopoulos, George, Lieber, André

Journal:

Human Gene Therapy

Year:

2008

Language:

english

File:

PDF, 188 KB

english, 2008

6

High Ambient Glucose Augments Angiotensin II-Induced Proinflammatory Gene mRNA Expression in Human Mesangial Cells: Effects of Valsartan and Simvastatin

Naito, Masayo, Shenoy, Ananth, Aoyama, Isao, Koopmeiners, Joseph S., Komers, Radko, Schnaper, H. William, Bomsztyk, Karol

Journal:

American Journal of Nephrology

Year:

2009

Language:

english

File:

PDF, 374 KB

english, 2009

7

Genome-bound enzymes as epigenetic drug targets in cancer

Bomsztyk, Karol, Wang, Yuliang

Journal:

Year:

2019

Language:

english

File:

PDF, 646 KB

english, 2019

8

Casein kinases phosphorylate multiple residues spanning the entire hnRNP K length

Michał Mikula, Jakub Karczmarski, Artur Dzwonek, Tymon Rubel, Ewa Hennig, Michał Dadlez, Janusz M. Bujnicki, Karol Bomsztyk, Jerzy Ostrowski

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Year:

2006

Language:

english

File:

PDF, 516 KB

english, 2006

9

Diverse molecular interactions of the hnRNP K protein

Karol Bomsztyk, Isabelle Van Seuningen, Hideaki Suzuki, Oleg Denisenko, Jerzy Ostrowski

Journal:

Year:

1997

Language:

english

File:

PDF, 312 KB

english, 1997

10

Renal Ischemia-Induced Cholesterol Loading: Transcription Factor Recruitment and Chromatin Remodeling along the HMG CoA Reductase Gene

Masayo Naito, Karol Bomsztyk, Richard A. Zager

Journal:

The American Journal of Pathology

Year:

2009

Language:

english

File:

PDF, 642 KB

english, 2009

11

Experimental acute lung injury induces multi-organ epigenetic modifications in key angiogenic genes implicated in sepsis-associated endothelial dysfunction

Bomsztyk, Karol, Mar, Daniel, An, Dowon, Sharifian, Roya, Mikula, Michal, Gharib, Sina A, Altemeier, William A, Liles, W Conrad, Denisenko, Oleg

Journal:

Critical Care (BioMed Central)

Year:

2015

Language:

english

File:

PDF, 1.81 MB

english, 2015

12

Evidence for Different Interleukin 1 Receptors in Murine B- and T-Cell Lines

Karol Bomsztyk, John E. Sims, Thomas H. Stanton, Jennifer Slack, Catherine J. McMahan, Mary A. Valentine and Steven K. Dower

Journal:

Proceedings of the National Academy of Sciences

Year:

1989

Language:

english

File:

PDF, 1.01 MB

english, 1989

13

Quantitative Model for Binary Measurements of Protein-Protein Interactions

Shi, Yi Y., Miller, Gerald A., Denisenko, Oleg, Qian, Hong, Bomsztyk, Karol

Journal:

Journal of Computational Biology

Year:

2007

Language:

english

File:

PDF, 440 KB

english, 2007

14

Distinct patterns of transcriptional and epigenetic alterations characterize acute and chronic kidney injury

Sharifian, Roya, Okamura, Daryl M., Denisenko, Oleg, Zager, Richard A., Johnson, Ali, Gharib, Sina A., Bomsztyk, Karol

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 2.99 MB

english, 2018

15

Cooperative binding of the hnRNP K three KH domains to mRNA targets

Agnieszka Paziewska, Lucjan S. Wyrwicz, Janusz M. Bujnicki, Karol Bomsztyk, Jerzy Ostrowski

Journal:

Year:

2004

Language:

english

File:

PDF, 171 KB

english, 2004

16

Regulation of ribosomal RNA expression across the lifespan is fine-tuned by maternal diet before implantation

Denisenko, Oleg, Lucas, Emma S., Sun, Congshan, Watkins, Adam J., Mar, Daniel, Bomsztyk, Karol, Fleming, Tom P.

Journal:

Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms

Year:

2016

Language:

english

File:

PDF, 512 KB

english, 2016

17

Allele-specific transcriptional elongation regulates monoallelic expression of theIGF2BP1gene

Brandon J Thomas, Eric D Rubio, Niklas Krumm, Pilib Ó Broin, Karol Bomsztyk, Piri Welcsh, John M Greally, Aaron A Golden, Anton Krumm

Journal:

Epigenetics & Chromatin

Year:

2011

Language:

english

File:

PDF, 1.42 MB

english, 2011

18

Profiling of human mesangial cell transcriptome reveals that all angiotensin II-responsive (AII) genes in these cells are inhibited by the AII Receptor Blocker (ARB), valsartan (vAL)

Isao Aoyama, Karol Bomsztyk

Journal:

American Journal of Hypertension

Year:

2005

Language:

english

File:

PDF, 116 KB

english, 2005

19

Protocol for the fast chromatin immunoprecipitation (ChIP) method

Nelson, Joel D, Denisenko, Oleg, Bomsztyk, Karol

Journal:

Nature Protocols

Year:

2006

Language:

english

File:

PDF, 208 KB

english, 2006

20

Heterogeneity of epigenetic changes at ischemia/reperfusion- and endotoxin-induced acute kidney injury genes

Mar, Daniel, Gharib, Sina A, Zager, Richard A, Johnson, Ali, Denisenko, Oleg, Bomsztyk, Karol

Journal:

Kidney International

Year:

2015

Language:

english

File:

PDF, 2.94 MB

english, 2015

21

Characterization of hnRNP K Protein–RNA Interactions

Karolina Klimek-Tomczak, Lucjan S. Wyrwicz, Sanjeev Jain, Karol Bomsztyk, Jerzy Ostrowski

Journal:

Journal of Molecular Biology

Year:

2004

Language:

english

File:

PDF, 576 KB

english, 2004

22

Regeneration of peritoneal effluent by Madin–Darby canine kidney cells-lined hollow fibers

Akira Saito, Hideaki Suzuki, Karol Bomsztyk, Suhail Ahmad

Journal:

Materials Science and Engineering: C

Year:

1998

Language:

english

File:

PDF, 407 KB

english, 1998

23

Cloning of a new human gene with short consensus repeats using the EST database

M. Nangaku, Stuart J. Shankland, Kiyoshi Kurokawa, Karol Bomsztyk, Richard J. Johnson, William G. Couser

Journal:

Year:

1997

Language:

english

File:

PDF, 248 KB

english, 1997

24

Comparison of IL-1α effectiveness in activating murine pre-B and T cell lines

Takaaki Iwasaki, John E. Sims, Kenneth Grabstein, Steven K. Dower, Nisa Rachie, Karol Bomsztyk

Journal:

Year:

1993

Language:

english

File:

PDF, 1.95 MB

english, 1993

25

Engineering a multicellular vascular niche to model hematopoietic cell trafficking

Kotha, Surya S., Hayes, Brian J., Phong, Kiet T., Redd, Meredith A., Bomsztyk, Karol, Ramakrishnan, Aravind, Torok-Storb, Beverly, Zheng, Ying

Journal:

Stem Cell Research & Therapy

Year:

2018

Language:

english

File:

PDF, 3.31 MB

english, 2018

26

Epigenetic changes in renal genes dysregulated in mouse and rat models of type 1 diabetes

Komers, Radko, Mar, Daniel, Denisenko, Oleg, Xu, Bei, Oyama, Terry T, Bomsztyk, Karol

Journal:

Laboratory Investigation

Year:

2013

Language:

english

File:

PDF, 409 KB

english, 2013

27

Losartan reverses permissive epigenetic changes in renal glomeruli of diabetic db/db mice

Reddy, Marpadga A, Sumanth, Putta, Lanting, Linda, Yuan, Hang, Wang, Mei, Mar, Daniel, Alpers, Charles E, Bomsztyk, Karol, Natarajan, Rama

Journal:

Kidney International

Year:

2014

Language:

english

File:

PDF, 1.02 MB

english, 2014

28

Activation of Endothelial-Leukocyte Adhesion Molecule 1 (ELAM-1) Gene Transcription

Kevin F. Montgomery, Laurelee Osborn, Catherine Hession, Richard Tizard, Deborah Goff, Cornelia Vassallo, Phillip I. Tarr, Karol Bomsztyk, Roy Lobb, John M. Harlan and Timothy H. Pohlman

Journal:

Proceedings of the National Academy of Sciences

Year:

1991

Language:

english

File:

PDF, 1.23 MB

english, 1991

29

Members of the poly (rC) binding protein family stimulate the activity of the c-myc internal ribosome entry segment in vitro and in vivo

Evans, Joanne R, Mitchell, Sally A, Spriggs, Keith A, Ostrowski, Jerzy, Bomsztyk, Karol, Ostarek, Dirk, Willis, Anne E

Journal:

Year:

2003

Language:

english

File:

PDF, 338 KB

english, 2003

30

Stimulation of p85/RING3 kinase in multiple organs after systemic administration of mitogens into mice

Ostrowski, Jerzy, Florio, Stephanie K, Denis, Gerald V, Suzuki, Hideaki, Bomsztyk, Karol

Journal:

Year:

1998

Language:

english

File:

PDF, 1.07 MB

english, 1998

31

Epistatic Interaction Between the K-Homology Domain Protein HEK2 and SIR1 at HMR and Telomeres in Yeast

Oleg Denisenko, Karol Bomsztyk

Journal:

Journal of Molecular Biology

Year:

2008

Language:

english

File:

PDF, 869 KB

english, 2008

32

Beads-free protein immunoprecipitation for a mass spectrometry-based interactome and posttranslational modifications analysis

Mikula, Michal, Rubel, Tymon, Karczmarski, Jakub, Statkiewicz, Malgorzata, Bomsztyk, Karol, Ostrowski, Jerzy

Journal:

Proteome Science

Year:

2015

Language:

english

File:

PDF, 1.58 MB

english, 2015

33

Sporadic DUX4 expression in FSHD myocytes is associated with incomplete repression by the PRC2 complex and gain of H3K9 acetylation on the contracted D4Z4 allele

Haynes, Premi, Bomsztyk, Karol, Miller, Daniel G.

Journal:

Epigenetics & Chromatin

Year:

2018

Language:

english

File:

PDF, 1.15 MB

english, 2018

34

Halogenated imidazole derivatives block RNA polymerase II elongation along mitogen inducible genes

Michal Mikula, Karolina Hanusek, Agnieszka Paziewska, Artur Dzwonek, Tymon Rubel, Karol Bomsztyk, Jerzy Ostrowski

Journal:

BMC Molecular Biology

Year:

2010

Language:

english

File:

PDF, 1.67 MB

english, 2010

35

Targeted integration of adenovirus vectors in hematopoietic stem cells

Hongjie Wang, Pavel Sova, Karol Bomsztyk, Qiliang Li, George Stamatoyannopolous, André Lieber

Journal:

Blood Cells, Molecules, and Diseases

Year:

2008

Language:

english

File:

PDF, 66 KB

english, 2008

36

Treatment of mice with EGF and orthovanadate activates cytoplasmic and nuclear MAPK, p70S6k, and p90rsk in the liver

Jerzy Ostrowski, Marek Woszczyński, Piotr Kowalczyk, Lech Trzeciak, Ewa Hennig, Karol Bomsztyk

Journal:

Journal of Hepatology

Year:

2000

Language:

english

File:

PDF, 1.36 MB

english, 2000

37

Purification of DNA-binding proteins using tandem DNA- affinity column

Ostrowski, Jerzy, Bomsztyk, Karol

Journal:

Nucleic Acids Research

Year:

1993

Language:

english

File:

PDF, 1.03 MB

english, 1993

38

Point Mutations in the WD40 Domain of Eed Block Its Interaction with Ezh2

Denisenko, Oleg, Shnyreva, Maria, Suzuki, Hideaki, Bomsztyk, Karol

Journal:

Molecular and Cellular Biology

Year:

1998

Language:

english

File:

PDF, 1.11 MB

english, 1998

39

Weak bases increase surface IgM expression in 70Z/3 B lymphoid cell line without increasing κ gene expression

Jerzy Ostrowski, Carol H. Sibley, Jan Stepinski, Thomas H. Stanton, Laura L. Smith, Karol Bomsztyk

Journal:

Cellular Immunology

Year:

1990

Language:

english

File:

PDF, 1.17 MB

english, 1990

40

Generation of phosphatidic acid and diacylglycerols following ligation of surface immunoglobulin in human B lymphocytes: Potential role in PKC activation

Mary A. Valentine, Stuart L. Bursten, Ward E. Harris, Kevin E. Draves, Brian A. Pollok, Jerzy Ostrowski, Karol Bomsztyk, Edward A. Clark

Journal:

Cellular Immunology

Year:

1992

Language:

english

File:

PDF, 1.47 MB

english, 1992

41

Landscape of the hnRNP K protein–protein interactome

Michał Mikula, Artur Dzwonek, Jakub Karczmarski, Tymon Rubel, Michał Dadlez, Lucjan S. Wyrwicz, Karol Bomsztyk, Jerzy Ostrowski

Journal:

Year:

2006

Language:

english

File:

PDF, 704 KB

english, 2006

42

M2 Macrophage Polarization Mediates Anti-inflammatory Effects of Endothelial Nitric Oxide Signaling

Lee, Woo Je, Tateya, Sanshiro, Cheng, Andrew M., Rizzo-DeLeon, Norma, Wang, Nicholas F., Handa, Priya, Wilson, Carole L., Clowes, Alexander W., Sweet, Ian R., Bomsztyk, Karol, Schwartz, Michael W., Ki

Journal:

Year:

2015

Language:

english

File:

PDF, 1.41 MB

english, 2015

43

Herbimycin A blocks IL-1-induced NF-κB DNA-binding activity in lymphoid cell lines

Takaaki Iwasaki, Yoshimasa Uehara, Lee Graves, Nisa Rachie, Karol Bomsztyk

Journal:

Year:

1992

Language:

english

File:

PDF, 550 KB

english, 1992

44

Clustering coefficients of protein-protein interaction networks

Miller, Gerald A., Shi, Yi Y., Qian, Hong, Bomsztyk, Karol

Journal:

Physical Review E

Year:

2007

Language:

english

File:

PDF, 273 KB

english, 2007

45

System-Wide Mapping of Activated Circuitry in Experimental Systemic Inflammatory Response Syndrome

Gharib, Sina A., Mar, Daniel, Bomsztyk, Karol, Denisenko, Oleg, Dhanireddy, Shireesha, Liles, W. Conrad, Altemeier, William A.

Journal:

Year:

2016

Language:

english

File:

PDF, 536 KB

english, 2016

46

Growth and development alter susceptibility to acute renal injury

Zager, Richard A, Johnson, Ali C M, Naito, Masayo, Lund, Steve R, Kim, Nayeon, Bomsztyk, Karol

Journal:

Kidney International

Year:

2008

Language:

english

File:

PDF, 245 KB

english, 2008

47

Sporadic DUX4 expression in FSHD myocytes is associated with incomplete repression by the PRC2 complex and gain of H3K9 acetylation on the contracted D4Z4 allele

Haynes, Premi, Bomsztyk, Karol, Miller, Daniel G.

Journal:

Epigenetics & Chromatin

Year:

2018

File:

PDF, 1.15 MB

2018

48

Molecular Heterogeneity of Interleukin-1 Receptors

STEVEN K. DOWER, JOHN E. SIMS, THOMAS H. STANTON, JENNIFER SLACK, CATHERINE J. McMAHAN, MARY A. VALENTINE, KAROL BOMSZTYK

Journal:

Annals of the New York Academy of Sciences

Year:

1990

Language:

english

File:

PDF, 699 KB

english, 1990

49

Expression patterns of the heterogeneous nuclear ribonucleoprotein K protein in hepatocyte culture, regenerating livers and hapatic tumors

Ostrowski, Jerzy, Kowalczyk, Piotr, Woszczynski, Marek, Bomsztyk, Karol

Journal:

Gastroenterology

Year:

2001

Language:

english

File:

PDF, 185 KB

english, 2001

50

Description of an IL-1-Responsive Kinase That Phosphorylates the K Protein. Enhancement of Phosphorylation by Selective DNA and RNA Motifs

Van Seuningen, Isabelle, Ostrowski, Jerzy, Bomsztyk, Karol

Journal:

Year:

1995

Language:

english

File:

PDF, 2.84 MB

english, 1995

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